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1

Delayed transitions in non-linear replicator networks: About ghosts and hypercycles

Josep Sardanyés, Ricard V. Solé

Journal:

Chaos, Solitons & Fractals

Year:

2007

Language:

english

File:

PDF, 540 KB

english, 2007

2

Error threshold ghosts in a simple hypercycle with error prone self-replication

Josep Sardanyés

Journal:

Chaos, Solitons & Fractals

Year:

2008

Language:

english

File:

PDF, 431 KB

english, 2008

3

Population dynamics of synthetic terraformation motifs

Solé, Ricard V., Montañez, Raúl, Duran-Nebreda, Salva, Rodriguez-Amor, Daniel, Vidiella, Blai, Sardanyés, Josep

Journal:

Royal Society Open Science

Year:

2018

Language:

english

File:

PDF, 2.15 MB

english, 2018

4

[Trends in Mathematics] Extended Abstracts Spring 2018 Volume 11 (Singularly Perturbed Systems, Multiscale Phenomena and Hysteresis: Theory and Applications) ||

Korobeinikov, Andrei, Caubergh, Magdalena, Lázaro, Tomás, Sardanyés, Josep

Year:

2019

Language:

english

File:

PDF, 8.94 MB

english, 2019

5

Ghosts in high dimensional non-linear dynamical systems: The example of the hypercycle

Josep Sardanyés

Journal:

Chaos, Solitons & Fractals

Year:

2009

Language:

english

File:

PDF, 3.02 MB

english, 2009

6

Dynamical role of the degree of intraspecific cooperation: A simple model for prebiotic replicators and ecosystems

Ernest Fontich, Josep Sardanyés

Journal:

Physica A: Statistical Mechanics and its Applications

Year:

2009

Language:

english

File:

PDF, 1.35 MB

english, 2009

7

The role of cooperation and parasites in non-linear replicator delayed extinctions

Josep Sardanyés, Ricard V. Solé

Journal:

Chaos, Solitons & Fractals

Year:

2007

Language:

english

File:

PDF, 1.21 MB

english, 2007

8

Red Queen strange attractors in host–parasite replicator gene-for-gene coevolution

Josep Sardanyés, Ricard V. Solé

Journal:

Chaos, Solitons & Fractals

Year:

2007

Language:

english

File:

PDF, 2.27 MB

english, 2007

9

Low dimensional homeochaos in coevolving host–parasitoid dimorphic populations: Extinction thresholds under local noise

Josep Sardanyés

Journal:

Communications in Nonlinear Science and Numerical Simulation

Year:

2011

Language:

english

File:

PDF, 1.19 MB

english, 2011

10

Information catastrophe in RNA viruses through replication thresholds

Ricard V. Solé, Josep Sardanyés, Juana Díez, Antonio Mas

Journal:

Journal of Theoretical Biology

Year:

2006

Language:

english

File:

PDF, 300 KB

english, 2006

11

Bifurcations and phase transitions in spatially extended two-member hypercycles

Josep Sardanyés, Ricard V. Solé

Journal:

Journal of Theoretical Biology

Year:

2006

Language:

english

File:

PDF, 1.64 MB

english, 2006

12

Simple quasispecies models for the survival-of-the-flattest effect: The role of space

Josep Sardanyés, Santiago F. Elena, Ricard V. Solé

Journal:

Journal of Theoretical Biology

Year:

2008

Language:

english

File:

PDF, 893 KB

english, 2008

13

Error threshold in RNA quasispecies models with complementation

Josep Sardanyés, Santiago F. Elena

Journal:

Journal of Theoretical Biology

Year:

2010

Language:

english

File:

PDF, 830 KB

english, 2010

14

Spatio-temporal dynamics in simple asymmetric hypercycles under weak parasitic coupling

Josep Sardanyés, Ricard V. Solé

Journal:

Physica D: Nonlinear Phenomena

Year:

2007

Language:

english

File:

PDF, 2.78 MB

english, 2007

15

Matching allele dynamics and coevolution in a minimal predator–prey replicator model

Josep Sardanyés, Ricard V. Solé

Journal:

Physics Letters A

Year:

2008

Language:

english

File:

PDF, 482 KB

english, 2008

16

Scaling law in saddle-node bifurcations for one-dimensional maps: a complex variable approach

Jorge Duarte, Cristina Januário, Nuno Martins, Josep Sardanyés

Journal:

Nonlinear Dynamics

Year:

2012

Language:

english

File:

PDF, 411 KB

english, 2012

17

Simple genomes, complex interactions: Epistasis in RNA virus

Elena, Santiago F., Solé, Ricard V., Sardanyés, Josep

Journal:

Chaos An Interdisciplinary Journal of Nonlinear Science

Year:

2010

Language:

english

File:

PDF, 1.19 MB

english, 2010

18

Topological entropy of catalytic sets: Hypercycles revisited

Josep Sardanyés, Jorge Duarte, Cristina Januário, Nuno Martins

Journal:

Communications in Nonlinear Science and Numerical Simulation

Year:

2012

Language:

english

File:

PDF, 728 KB

english, 2012

19

On chaos, transient chaos and ghosts in single population models with Allee effects

Jorge Duarte, Cristina Januário, Nuno Martins, Josep Sardanyés

Journal:

Nonlinear Analysis: Real World Applications

Year:

2012

Language:

english

File:

PDF, 1.07 MB

english, 2012

20

Complex dynamics of defective interfering baculoviruses during serial passage in insect cells

Mark P. Zwart, Gorben P. Pijlman, Josep Sardanyés…

Journal:

Journal of Biological Physics

Year:

2013

Language:

english

File:

PDF, 1.05 MB

english, 2013

21

The case for transmissible antivirals to control population-wide infectious disease

Notton, Timothy, Sardanyés, Josep, Weinberger, Ariel D., Weinberger, Leor S.

Journal:

Trends in Biotechnology

Year:

2014

Language:

english

File:

PDF, 522 KB

english, 2014

22

Chaos and crises in a model for cooperative hunting: A symbolic dynamics approach

Duarte, Jorge, Januário, Cristina, Martins, Nuno, Sardanyés, Josep

Journal:

Chaos An Interdisciplinary Journal of Nonlinear Science

Year:

2009

Language:

english

File:

PDF, 3.69 MB

english, 2009

23

Can a minimal replicating construct be identified as the embodiment of cancer?

Solé, Ricard V., Valverde, Sergi, Rodriguez-Caso, Carlos, Sardanyés, Josep

Journal:

Year:

2014

Language:

english

File:

PDF, 1016 KB

english, 2014

24

Quantifying chaos for ecological stoichiometry

Duarte, Jorge, Januário, Cristina, Martins, Nuno, Sardanyés, Josep

Journal:

Chaos An Interdisciplinary Journal of Nonlinear Science

Year:

2010

Language:

english

File:

PDF, 2.29 MB

english, 2010

25

TOPOLOGICAL COMPLEXITY AND PREDICTABILITY IN THE DYNAMICS OF A TUMOR GROWTH MODEL WITH SHILNIKOV'S CHAOS

DUARTE, JORGE, JANUÁRIO, CRISTINA, RODRIGUES, CARLA, SARDANYÉS, JOSEP

Journal:

International Journal of Bifurcation and Chaos

Year:

2013

Language:

english

File:

PDF, 2.01 MB

english, 2013

26

GHOSTS IN THE ORIGINS OF LIFE?

SARDANYÉS, JOSEP, SOLÉ, RICARD V.

Journal:

International Journal of Bifurcation and Chaos

Year:

2006

Language:

english

File:

PDF, 791 KB

english, 2006

27

CHAOTIC STABILITY IN SPATIALLY-RESOLVED HOST-PARASITE REPLICATORS: THE RED QUEEN ON A LATTICE

SARDANYÈS, JOSEP, SOLÈ, RICARD V.

Journal:

International Journal of Bifurcation and Chaos

Year:

2007

Language:

english

File:

PDF, 2.16 MB

english, 2007

28

ON THE METAPOPULATION DYNAMICS OF AUTOCATALYSIS: EXTINCTION TRANSIENTS RELATED TO GHOSTS

SARDANYÉS, JOSEP, FONTICH, ERNEST

Journal:

International Journal of Bifurcation and Chaos

Year:

2010

Language:

english

File:

PDF, 1.21 MB

english, 2010

29

Activation of effector immune cells promotes tumor stochastic extinction: A homotopy analysis approach

Sardanyés, Josep, Rodrigues, Carla, Januário, Cristina, Martins, Nuno, Gil-Gómez, Gabriel, Duarte, Jorge

Journal:

Applied Mathematics and Computation

Year:

2015

Language:

english

File:

PDF, 1.70 MB

english, 2015

30

Dynamics and bifurcations in a simple quasispecies model of tumorigenesis

Castillo, Vanessa, Lázaro, J. Tomás, Sardanyés, Josep

Journal:

Computational & Applied Mathematics

Year:

2017

Language:

english

File:

PDF, 1.60 MB

english, 2017

31

How Complex, Probable, and Predictable is Genetically Driven Red Queen Chaos?

Duarte, Jorge, Rodrigues, Carla, Januário, Cristina, Martins, Nuno, Sardanyés, Josep

Journal:

Acta Biotheoretica

Year:

2015

Language:

english

File:

PDF, 3.83 MB

english, 2015

32

Bifurcations analysis of oscillating hypercycles

Guillamon, Antoni, Fontich, Ernest, Sardanyés, Josep

Journal:

Journal of Theoretical Biology

Year:

2015

Language:

english

File:

PDF, 1.06 MB

english, 2015

33

Abrupt transitions to tumor extinction: a phenotypic quasispecies model

Sardanyés, Josep, Martínez, Regina, Simó, Carles, Solé, Ricard

Journal:

Journal of Mathematical Biology

Year:

2017

Language:

english

File:

PDF, 2.37 MB

english, 2017

34

Predicting the Stability of Homologous Gene Duplications in a Plant RNA Virus

Willemsen, Anouk, Zwart, Mark P., Higueras, Pablo, Sardanyés, Josep, Elena, Santiago F.

Journal:

Genome Biology and Evolution

Year:

2016

Language:

english

File:

PDF, 964 KB

english, 2016

35

Full analysis of small hypercycles with short-circuits in prebiotic evolution

Sardanyés, Josep, Tomás Lázaro, J., Guillamon, Antoni, Fontich, Ernest

Journal:

Physica D: Nonlinear Phenomena

Year:

2017

Language:

english

File:

PDF, 5.44 MB

english, 2017

36

Variability in mutational fitness effects prevents full lethal transitions in large quasispecies populations

Sardanyés, Josep, Simó, Carles, Martínez, Regina, Solé, Ricard V., Elena, Santiago F.

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 855 KB

english, 2015

37

Optimal homotopy analysis of a chaotic HIV-1 model incorporating AIDS-related cancer cells

Duarte, Jorge, Januário, Cristina, Martins, Nuno, Ramos, C. Correia, Rodrigues, Carla, Sardanyés, Josep

Journal:

Numerical Algorithms

Year:

2017

Language:

english

File:

PDF, 3.50 MB

english, 2017

38

Erratum: Corrigendum: Variability in mutational fitness effects prevents full lethal transitions in large quasispecies populations

Sardanyés, Josep, Simó, Carles, Martínez, Regina, Solé, Ricard V., Elena, Santiago F.

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 106 KB

english, 2015

39

Noise-induced bistability in the fate of cancer phenotypic quasispecies: a bit-strings approach

Sardanyés, Josep, Alarcón, Tomás

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 4.47 MB

english, 2018

40

Trans-heteroclinic bifurcation: a novel type of catastrophic shift

Sardanyés, Josep, Martínez, Regina, Simó, Carles

Journal:

Royal Society Open Science

Year:

2018

Language:

english

File:

PDF, 859 KB

english, 2018

41

Bifurcation Gaps in Asymmetric and High-Dimensional Hypercycles

Puig, Júlia, Farré, Gerard, Guillamon, Antoni, Fontich, Ernest, Sardanyés, Josep

Journal:

International Journal of Bifurcation and Chaos

Year:

2018

Language:

english

File:

PDF, 2.14 MB

english, 2018

42

Noise-induced bistability in the quasi-neutral coexistence of viral RNAs under different replication modes

Sardanyés, Josep, Arderiu, Andreu, Elena, Santiago F., Alarcón, Tomás

Journal:

Journal of The Royal Society Interface

Year:

2018

Language:

english

File:

PDF, 704 KB

english, 2018

43

Exploiting delayed transitions to sustain semiarid ecosystems after catastrophic shifts

Vidiella, Blai, Sardanyés, Josep, Solé, Ricard

Journal:

Journal of The Royal Society Interface

Year:

2018

Language:

english

File:

PDF, 2.84 MB

english, 2018

44

Differences in Accumulation and Virulence Determine the Outcome of Competition during Tobacco etch virus Coinfection

Lafforgue, Guillaume, Sardanyés, Josep, Elena, Santiago F., Martin, Darren

Journal:

Year:

2011

Language:

english

File:

PDF, 383 KB

english, 2011

45

Quasispecies Spatial Models for RNA Viruses with Different Replication Modes and Infection Strategies

Sardanyés, Josep, Elena, Santiago F., Yates, Andrew

Journal:

Year:

2011

Language:

english

File:

PDF, 792 KB

english, 2011

46

Computational implementation of a tunable multicellular memory circuit for engineered eukaryotic consortia

Sardanyés, Josep, Bonforti, Adriano, Conde, Nuria, Solé, Ricard, Macia, Javier

Journal:

Frontiers in Physiology

Year:

2015

Language:

english

File:

PDF, 11.66 MB

english, 2015

47

Finite-time scaling in local bifurcations

Corral, Álvaro, Sardanyés, Josep, Alsedà, Lluís

Journal:

Scientific Reports

Year:

2018

File:

PDF, 1.57 MB

2018

48

On the effect of time lags on a saddle-node remnant in hyperbolic replicators

Gimeno, Joan, Jorba, Àngel, Sardanyés, Josep

Journal:

Journal of Physics A Mathematical and Theoretical

Year:

2018

Language:

english

File:

PDF, 1.43 MB

english, 2018

49

Finite-time scaling in local bifurcations

Corral, Álvaro, Sardanyés, Josep, Alsedà, Lluís

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 1.57 MB

english, 2018

50

Viral replication modes in single-peak fitness landscapes: a dynamical systems analysis

Fornés, Joan, Tomás Lázaro, J., Alarcón, Tomás, Elena, Santiago F., Sardanyés, Josep

Journal:

Journal of Theoretical Biology

Year:

2018

Language:

english

File:

PDF, 9.78 MB

english, 2018

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